dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01261
Location and strand information: 5259 - 6905 (+)
Family: 4.C.1.1.4
Protein type: TC
Protein description: 3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01262
Location and strand information: 6970 - 8142 (-)
Family: PAS+HisKA+HATPase_c
Protein type: STP
Protein description: Sensor histidine kinase RcsC

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01263
Location and strand information: 8314 - 9732 (+)
Family: null
Protein type: null
Protein description: Adenosylhomocysteinase

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01264
Location and strand information: 9833 - 12340 (+)
Family: 9.B.144.1.4
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01265
Location and strand information: 12716 - 13594 (-)
Family: HTH_AraC+HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaR

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01266
Location and strand information: 13778 - 15163 (+)
Family: 2.A.1.1.3
Protein type: TC
Protein description: D-xylose-proton symporter

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01267
Location and strand information: 15261 - 18584 (+)
Family: TPR_2+TPR_1+TPR_2
Protein type: STP
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01268
Location and strand information: 18705 - 20048 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01269
Location and strand information: 20059 - 23091 (+)
Family: 1.B.14.6.1
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01270
Location and strand information: 23105 - 24730 (+)
Family: 8.A.46.1.5
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01271
Location and strand information: 24766 - 26388 (+)
Family: GH30|GH30_4
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 5.9121
Protein molecular weight: 61109.99
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01272
Location and strand information: 26479 - 28254 (+)
Family: PL0|GH105
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.4587
Protein molecular weight: 68449.79
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01273
Location and strand information: 28251 - 30161 (+)
Family: PL17
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.142
Protein molecular weight: 72563.37
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01274
Location and strand information: 30219 - 32957 (+)
Family: GH2|CBM32
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 5.7292
Protein molecular weight: 104004.57
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01275
Location and strand information: 33043 - 33585 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01276
Location and strand information: 34080 - 34982 (-)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01277
Location and strand information: 35112 - 36116 (-)
Family: 9.B.33.1.2
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01278
Location and strand information: 36129 - 36902 (-)
Family: LytTR
Protein type: TF
Protein description: Transcriptional regulatory protein YpdB

Gene clsuter ID: MGYG000004876_11|CGC1
Gene ID: MGYG000004876_01279
Location and strand information: 37068 - 38300 (-)
Family: 3.A.1.125.1
Protein type: TC
Protein description: Lipoprotein-releasing system transmembrane protein LolE

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CGC gene composition diagram

Gene composition table

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004876_01261	3-[(3aS,4S,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase	TC	5259	6905	+	4.C.1.1.4
MGYG000004876_01262	Sensor histidine kinase RcsC	STP	6970	8142	-	PAS\| HisKA\| HATPase_c
MGYG000004876_01263	Adenosylhomocysteinase	null	8314	9732	+	AdoHcyase\| AdoHcyase_NAD
MGYG000004876_01264	hypothetical protein	TC	9833	12340	+	9.B.144.1.4
MGYG000004876_01265	HTH-type transcriptional activator RhaR	TF	12716	13594	-	HTH_AraC+HTH_AraC
MGYG000004876_01266	D-xylose-proton symporter	TC	13778	15163	+	2.A.1.1.3
MGYG000004876_01267	hypothetical protein	STP	15261	18584	+	TPR_2\| TPR_1\| TPR_2
MGYG000004876_01268	hypothetical protein	null	18705	20048	+	No domain
MGYG000004876_01269	TonB-dependent receptor SusC	TC	20059	23091	+	1.B.14.6.1
MGYG000004876_01270	hypothetical protein	TC	23105	24730	+	8.A.46.1.5
MGYG000004876_01271	hypothetical protein	CAZyme	24766	26388	+	GH30\| GH30_4
MGYG000004876_01272	hypothetical protein	CAZyme	26479	28254	+	PL0\| GH105
MGYG000004876_01273	hypothetical protein	CAZyme	28251	30161	+	PL17
MGYG000004876_01274	Beta-galactosidase	CAZyme	30219	32957	+	GH2\| CBM32
MGYG000004876_01275	hypothetical protein	null	33043	33585	-	DUF4890
MGYG000004876_01276	hypothetical protein	null	34080	34982	-	DUF6268
MGYG000004876_01277	hypothetical protein	TC	35112	36116	-	9.B.33.1.2
MGYG000004876_01278	Transcriptional regulatory protein YpdB	TF	36129	36902	-	LytTR
MGYG000004876_01279	Lipoprotein-releasing system transmembrane protein LolE	TC	37068	38300	-	3.A.1.125.1
Protein ID	Protein Name	Type	Start	End	Strand	Signature